From the first article:
“We know that in reality, in the European constitutional treaty there are no religious references, so it’s not a question with any validity in European law. But it’s a question to be asked of EU members at the national level, and of public opinion in these countries. We see in surveys today, notably the latest Eurobarometers, that only 30% of Europeans are in favour of enlargement to include Turkey.
“That doesn’t stop most of the governments of the EU from being in favour of Turkish membership, and that’s a very interesting difference to analyse politically. We really only have one member state objecting head-on to Turkish adhesion, and that’s France. Germany’s position is still very ambiguous. Austria is also against the adhesion, and then, more globally, there are other member states that are in favour, and some of them defend it seriously, notably the countries of the eastern Mediterranean.
Looks to me like it's more of a political problem with France than the EU, the second article pretty much proves it. Turkey is part of Europe just as much it is part of the Middle East.