The Defence Minister of India has already said that CAG report was working on 2 year old data and that the situation is contentiously being improved and has already been improved by 50% since 2013.
It goes without saying that the only military in the region who undergoes a regular and through audit has these issues highlighted, everyone else likes to puff out their chests and pretend everything is tip top, if these things aren't highlighted how will you address them within your own militaries- every thought about that?
What is perceived to be India's weakness is actually a major strength.