Can you please not make it sectarian before we've even had a chance to dig in?
The magnitude of damage caused to the State of Pakistan at the hands of Sunni Wahabbi (or Salafi/Deobandi) militants VS. Shia extremist militants is night and day. However, I totally agree --- any extremist or overly literalist interpretation of religion (or any other ideology) is problematic, and I am sure that the people at NACTA took all such sources of extremism into consideration. Don't worry!
It was already a part of the National Action Plan for years. Nobody bothered to implement it.
Even now, we have no shortage of recommendations --- the big question is implementation.
I can write something along the lines of: We must promote a State-sanctioned interpretation/version of Islam and reform all madrassas.
Okay, great.
But how? How will the political and military elite grow a pair to start this painful process? Which government will want to destabilize itself and the country (in the short term) to achieve these long-term goals?