You still don't get it Why 'some" Muslims, why not 'all' Muslims?
The main problem with your standard is that it is not objective, and ripe for abuse. Who decides which Muslims are anti-national, and which are not? That places too much burden on a minority community when you place their well-being in the whims of those who decide which ones are patriotic and which are not.
The Second World War was fought exactly for this reason. The Jews had the burden to prove that were good Jews or Hitler could send them to Gas chambers based on the whims of a Nazi officer.
Surely when an entire world War was fought to defeat that mindset, we cannot allow that kind of an ideology to grow in India, anymore than it has already done. There will be more resistance, and if required, the complete destruction of India to defeat the hateful Nazi ideology of BJP party. Similar to what had happened to Germany by Allies.