I'm sorry but Pakistan getting in the way of Indo-Turk relationship becasue of a "muslim brotherhood" realtionship is utter bs. Pakistan is ALWAYS going to be upset about ANY postive news coming out of India as they have the classic "younger sibling" inferiority complex. Just look at Indo-Us, Indo-China,Indo-EU; Pakistan has been upset at all of the positive movements in all these relationships (esp Indo-US) and has tried to get in the way of all, now there is talk of Indo-Turk relationship they are again beating their chests but now as oppesed to before when it was Indo-US, Indo-China Pakistan used the "long-standing reltionship" card but now they are using the "muslim brotherhood" card.
If Turkey is an aspiring reginal power like India they will look past all this smoke from Pakistan and weigh up thier options in terms of who can give more to them . And i'm sure they'll come to the same conclusion as the rest of the World that it is most definatly India!
These days politics is not about religon solely anymore, a lesson Pakistan has yet to realise, they are expecting their "big brother" Soudi Arabia to swoop in when the s$%t hit the fan for them- deploying 1000s of F-15s and AWACS, I doubt this is the case.